Laboratories for Mathematics, Lifesciences, and Informatics

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_ 2009

• A. Author and B. Author: "Sample Article", Jornal Name, Vol.1, No.1, pp.1-2 (2009).PDF
• C. Author: "Sample Article 2", Jornal Name, Vol.1, No.1, pp.3-4 (2009).PDF

_ 2008

_ 2008/unconfirmed

• Xing-Ming Zhao, Luonan Chen, and Kazuyuki Aihara: ``Protein Function Prediction with the Shortest Path in Functional Linkage Graph and Boosting,'' International Journal of Bioinformatics Research and Applications, Vol.4, pp.375--384 (2008).

_ 2008/December

• Aiko Miyamura Ideta, Gouhei Tanaka, Takumi Takeuchi, and Kazuyuki Aihara: ``A Mathematical Model of Intermittent Androgen Suppression for Prostate Cancer,'' Journal of Nonlinear Science, Vol.18, pp.593--641 (2008). PDF

• Munehisa Sekikawa, Takashi Kohno, and Kazuyuki Aihara: ``An Integrated Circuit Design of a Silicon Neuron and its Measurement Results,'' Artificial Life and Robotics, Vol.13, No.1, pp.116--119 (2008).

• Makito Oku and Kazuyuki Aihara: ``Networked Reinforcement Learning,'' Artificial Life and Robotics, Vol.13, No.1, pp.112--115 (2008--12). PDF

_ 2008/November

• Yoshito Hirata, Sunsuke Horai, and Kazuyuki Aihara: ``Reproduction of distance matrices and original time series from recurrence plots and its applications,'' European Physical Journal Special Topics, Vol.164, pp.13--22 (2008). PDF

• Tatsuo Yanagita, Hiromichi Suetani, and Kazuyuki Aihara: ``Bifurcation Analysis of Solitary and Synchronized Pulses and Formation of Reentrant Waves in Laterally Coupled Excitable Fibers,'' Physical Review E, Vol.78, 056208--1--11 (2008--11).

• Hayato Takahashi: ``On a Definition of Random Sequences with Respect to Conditional Probability,'' Information and Computation, 206(2008),pp.1375-1382 (2008--11). PDF

_ 2008/September

• Kazuhiro Sakamoto, Hajime Mushiake, Naohiro Saito, Kazuyuki Aihara, Masafumi Yano, and Jun Tanji: ``Discharge Synchrony during the Transition of Behavioral Goal Representations Encoded by Discharge Rates of Prefrontal Neurons,'' Cerebral Cortex, Vol.18, No.9, pp.2036--2045 (2008--9). PDF

• Gouhei Tanaka, Kunichika Tsumoto, Shigeki Tsuji, and Kazuyuki Aihara: ``Bifurcation Analysis on a Hybrid Systems Model of Intermittent Hormonal Therapy for Prostate Cancer,'' Physica D, Vol.237, No.20, pp.2616--2627 (2008--9). PDF

_ 2008/August

• Hiroyuki Okano, Tetsuya J. Kobayashi, Hirokazu Tozaki, Hidenori Kimura: ``Estimation of the Source-by-source Effect of Autorepression on Genetic Noise,'' Biophysical Journal, Vol.95, No.3, pp.1063--1074 (2008--8). &ref(): File not found: "Okano-PHJ2008.pdf" at page "Archive";

• Hong Fan, Zhijie Wang, Takaaki Ohnishi, Hiroo Saito, and Kazuyuki Aihara: ``Multicommunity Weight-driven Bipartite Network Model,'' Physical Review E, Vol.78, 026103--1--7 (2008--8). PDF

• Takashi Kanamaru and Kazuyuki Aihara: ``Stochastic Synchrony of Chaos in a Pulse-Coupled Neural Network with Both Chemical and Electrical Synapses Among Inhibitory Neurons,'' Neural Computation, Vol.20, pp.1951--1972 (2008--8). PDF

• Hiromichi Suetani, Tatsuo Yanagita and Kazuyuki Aihara: ``PULSE DYNAMICS IN COUPLED EXCITABLE FIBERS: SOLITON-LIKE COLLISION, PHASE LOCKING, AND RECOMBINATION,'' International Journal of Bifurcation and Chaos, Vol. 18, No. 8 pp.2289・308 (2008--8) PDF

• Guoguang He, Luonan Chen, and Kazuyuki Aihara: ``Associative Memory With a Controlled Chaotic Neural Network,'' Neurocomputing, Vol.71, pp.2794--2805 (2008--8). PDF

• Ruiqi Wang, Chunguang Li, Luonan Chen, and Kazuyuki Aihara: ``Modeling and Analyzing Biological Oscillations in Molecular Networks,'' Proceedings of the IEEE, Vol.96, pp.1361--1385 (2008--8). PDF

_ 2008/July

• Wendi Wang, Shinji Nakaoka, Yasuhiro Takeuchi: ``Invest Conflicts of Adult Predators,'' Journal of Theoretical Biology, Vol.253, No.1, pp.12--23 (2008--7). PDF

• Yoshihiko Horio and Kazuyuki Aihara: ``Analog Computation through High-dimensional Physical Chaotic Neuro-dynamics,'' Physica D, Vol.237, No.9, pp.1215--1225 (2008--7). PDF

• Yoshito Hirata, Yuichi Katori, Hidetoshi Shimokawa, Hideyuki Suzuki, Timothy A. Brenkinsop, Eric J. Lang, and Kazuyuki Aihara: ``Testing a Neural Coding Hypothesis using Surrogate Data,'' Journal of Neuroscience Methods, Vol.172, pp.312--322 (2008). PDF

• Bing Wang, Kazuyuki Aihara, and Luonan Chen: "Jamming in Weighted Scale-free Gradient Networks," Europhysics Letters, Vol.83, pp.28006 (2008). PDF

• Xing-Ming Zhao, Yong Wang, Luonan Chen, and Kazuyuki Aihara: ``Protein domain annotation with integration of heterogeneous information sources,'' Proteins: Structure, Function, and Bioinformatics, Vol.72, No.1, pp.461--473 (2008--7). PDF

• Shinji Nakaoka, and Yasuhiro Takeuchi: ``Two types of coexistence in cross-feeding microbial consortia,・ AIP Proceedings, Vol. 1028, pp. 233--260 (2008--7). &ref(): File not found: "Nakaoka-Biocomp08.pdf" at page "Archive/List1.files";

• Ikkyu Aihara and Kunichika Tsumoto: ``Nonlinear Dynamics and Bifurcations of a Coupled Oscillator Model for Calling Behavior of Japanese Tree Frogs (Hyla Japonica),'' Mathematical Biosciences, Vol.214, No.1/2, pp.6--10 (2008--7/8). &ref(): File not found: "Ikkyu-MBS2008.pdf" at page "Archive";

• Takashi Shimada and Kazuyuki Aihara: ``A Nonlinear Model with Competition between Prostate Tumor Cells and its Application to Intermittent Androgen Suppression Therapy of Prostate Cancer,'' Mathematical Biosciences, Vol.214, No.1/2, pp.134--139 (2008--7/8). PDF

• Takahisa Ogino,Yoshihiko Horio and Kazuyuki Aihara: ``Analysis of Chaotic Neural Network through Mutual Information in Solving Quadratic Assignment Problems,'' Journal of Signal Processing, Vol.12, No.4, pp.291-294 (2008--7). PDF

_ 2008/June

• Masahiro Kawasaki, Masataka Watanabe, Jiro Okuda, Masamichi Sakagami, and Kazuyuki Aihara: ``Human Posterior Parietal Cortex Maintains Color, Shape and Motion in Visual Short-term Memory,'' Brain Research, Vol.1213, pp.91--97 (2008--6--5). PDF

• Xing-Ming Zhao, Yong Wang, Luonan Chen, and Kazuyuki Aihara: ``Protein Domain Annotation with Predicted Domain-Domain Interaction Networks,'' Protein and Peptide Letters, Vol.15, No.5, pp.456--462 (2008--6). PDF

• Chunguang Li, Luonan Chen, and Kazuyuki Aihara: ``Impulsive Control of Stochastic Systems with Applications in Chaos Control, Chaos Synchronization, and Neural Networks,'' Chaos, Vol.18, No.2, 023132 (2008--6). PDF

• Manish Dev Shrimali, Sudeshna Sinha, and Kazuyuki Aihara: ``Asynchronous Updating of Threshold-coupled Chaotic Neurons,'' Pramana-Journal of Physics, Vol.70, No.6, pp.1127--1134 (2008--6). PDF

• Hiroyasu Ando, Sudeshna Sinha, and Kazuyuki Aihara: ``Emergent Organization of Oscillator Clusters in Coupled Self-regulatory Chaotic Maps,'' Pramana-Journal of Physics, Vol.70, No.6, pp.1153--1164 (2008--6). PDF

_ 2008/May

• Nobuaki Sugimine, Naoki Masuda, Norio Konno, and Kazuyuki Aihara: ``On Global and Local Critical Points of Extended Contact Process on Homogeneous Trees,'' Mathematical Bioscience, Vol.213, No.1, pp.13-17 (2008--5). PDF

• Xing-Ming Zhao, Rui-Sheng Wang, Luonan Chen, and Kazuyuki Aihara: ``Uncovering Signal Transduction Networks from High-throughput Data by Integer Linear Programming,'' Nucleic Acids Research, Vol.36, No.9, e48 (2008--5). PDF

_ 2008/April

• Munehisa Sekikawa, Naohiko Inaba, Takashi Tsubouchi, and Kazuyuki Aihara: ``Analysis of Torus Breakdown into Chaos in a Constraint Duffing van der Pol Oscillator,'' International Journal of Bifurcation and Chaos, Vol.18, No.4, pp.1051--1068 (2008--4). PDF

• Hirokazu Tozaki, Tetsuya J. Kobayashi, Hiroyuki Okano, Ryo Yamamoto, Kazuyuki Aihara, and Hidenori Kimura: ``Reconstructing the Single-cell-level Behavior of a Toggle Switch from Population-level Measurements,'' FEBS Letter, Vol.582, No.7, pp.1067--1072 (2008--4). PDF

• Shingo Iwami, Shinji Nakaoka, and Yasuhiro Takeuchi: ``Mathematical Analysis of HIV Model with Frequency Dependence and Viral Diversity,・ Mathematical Biosciences and Engineerings, Vol. 5, pp. 457--476 (2008--4). &ref(): File not found: "Iwami-MBE07.pdf" at page "Archive/List1.files";

• Makito Oku and Kazuyuki Aihara: ``A Mathematical Model of Planning in the Prefrontal Cortex,'' Artificial Life and Robotics, Vol.12, No.1--2, pp.227--231 (2008--4). PDF

_ 2008/March

• Takashi Kohno and Kazuyuki Aihara: ``Mathematical-model-based Design of Silicon Burst Neurons,'' Neurocomputing, Vol.71, No.7-9, pp.1619--1628 (2008--3). PDF

• Xing-Ming Zhao, Luonan Chen, Kazuyuki Aihara: ``Protein Classification with Imbalanced Data,'' Proteins: Structure, Function, and Bioinformatics, Vol.70, No.4, pp.1125--1132 (2008--3). PDF

• Guoguang He, Manish Dev Shrimali and Kazuyuki Aihara: ``Threshold Activated Control of Chaotic Neural Network,'' Neural Networks, Vol.21, pp.114--121 (2008--3/4). PDF

_ 2008/February

• Yoshito Hirata, Danilo P. Mandic, Hideyuki Suzuki, and Kazuyuki Aihara: ``Wind Direction Modelling using Multiple Observation Points,'' Philosophical Transactions of the Royal Society A, Vol.366, pp. 591--607 (2008--2). PDF

• Kenji Morita, Rita Kalra, Kazuyuki Aihara, and Hugh P.C. Robinson: ``Recurrent Synaptic Input and the Timing of Gamma-frequency-modulated Firing of Pyramidal Cells During Neocortical "UP" States,'' Journal of Neuroscience, Vol.28, pp.1871--1881 (2008--2--20). PDF

_ 2008/January

• Xing-Ming Zhao, Yong Wang, Luonan Chen, and Kazuyuki Aihara: ``Gene Function Prediction using Labeled and Unlabeled Data,'' BMC Bioinformatics, Vol.9, No.57 (2008--1--28). PDF

_ 2007

_ 2006

_ 2005

_ 2004