Laboratories for Mathematics, Lifesciences, and Informatics

Journals

_ 2009

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_ 2008

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_ 2008/unconfirmed

Xing-Ming Zhao, Luonan Chen, and Kazuyuki Aihara: ``Protein Function Prediction with the Shortest Path in Functional Linkage Graph and Boosting,'' International Journal of Bioinformatics Research and Applications, Vol.4, pp.375--384 (2008).
DOI:10.1504/IJBRA.2008.021175

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_ 2008/December

Aiko Miyamura Ideta, Gouhei Tanaka, Takumi Takeuchi, and Kazuyuki Aihara: ``A Mathematical Model of Intermittent Androgen Suppression for Prostate Cancer,'' Journal of Nonlinear Science, Vol.18, pp.593--641 (2008).
DOI:10.1007/s00332-008-9031-0 PDF

Munehisa Sekikawa, Takashi Kohno, and Kazuyuki Aihara: ``An Integrated Circuit Design of a Silicon Neuron and its Measurement Results,'' Artificial Life and Robotics, Vol.13, No.1, pp.116--119 (2008).
DOI:10.1007/s10015-008-0530-8

Makito Oku and Kazuyuki Aihara: ``Networked Reinforcement Learning,'' Artificial Life and Robotics, Vol.13, No.1, pp.112--115 (2008--12).
DOI:10.1007/s10015-008-0565-x PDF

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_ 2008/November

Yoshito Hirata, Sunsuke Horai, and Kazuyuki Aihara: ``Reproduction of distance matrices and original time series from recurrence plots and its applications,'' European Physical Journal Special Topics, Vol.164, pp.13--22 (2008).
DOI:10.1140/epjst/e2008-00830-8 PDF

Tatsuo Yanagita, Hiromichi Suetani, and Kazuyuki Aihara: ``Bifurcation Analysis of Solitary and Synchronized Pulses and Formation of Reentrant Waves in Laterally Coupled Excitable Fibers,'' Physical Review E, Vol.78, 056208--1--11 (2008--11).
DOI:10.1103/PhysRevE.78.056208

Hayato Takahashi: ``On a Definition of Random Sequences with Respect to Conditional Probability,'' Information and Computation, 206(2008),pp.1375-1382 (2008--11).
DOI:10.1016/j.ic.2008.08.003 PDF

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_ 2008/September

Kazuhiro Sakamoto, Hajime Mushiake, Naohiro Saito, Kazuyuki Aihara, Masafumi Yano, and Jun Tanji: ``Discharge Synchrony during the Transition of Behavioral Goal Representations Encoded by Discharge Rates of Prefrontal Neurons,'' Cerebral Cortex, Vol.18, No.9, pp.2036--2045 (2008--9).
DOI:10.1093/cercor/bhm234 PDF

Gouhei Tanaka, Kunichika Tsumoto, Shigeki Tsuji, and Kazuyuki Aihara: ``Bifurcation Analysis on a Hybrid Systems Model of Intermittent Hormonal Therapy for Prostate Cancer,'' Physica D, Vol.237, No.20, pp.2616--2627 (2008--9).
DOI:10.1016/j.physd.2008.03.044 PDF

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_ 2008/August

Hiroyuki Okano, Tetsuya J. Kobayashi, Hirokazu Tozaki, Hidenori Kimura: ``Estimation of the Source-by-source Effect of Autorepression on Genetic Noise,'' Biophysical Journal, Vol.95, No.3, pp.1063--1074 (2008--8).
DOI:10.1529/biophysj.107.124677 &ref(): File not found: "Okano-PHJ2008.pdf" at page "Archive";

Hong Fan, Zhijie Wang, Takaaki Ohnishi, Hiroo Saito, and Kazuyuki Aihara: ``Multicommunity Weight-driven Bipartite Network Model,'' Physical Review E, Vol.78, 026103--1--7 (2008--8).
DOI:10.1103/PhysRevE.78.026103 PDF

Takashi Kanamaru and Kazuyuki Aihara: ``Stochastic Synchrony of Chaos in a Pulse-Coupled Neural Network with Both Chemical and Electrical Synapses Among Inhibitory Neurons,'' Neural Computation, Vol.20, pp.1951--1972 (2008--8).
DOI:10.1162/neco.2008.05-07-516 PDF

Hiromichi Suetani, Tatsuo Yanagita and Kazuyuki Aihara: ``PULSE DYNAMICS IN COUPLED EXCITABLE FIBERS: SOLITON-LIKE COLLISION, PHASE LOCKING, AND RECOMBINATION,'' International Journal of Bifurcation and Chaos, Vol. 18, No. 8 pp.2289・308 (2008--8)
DOI:10.1142/S0218127408021713 PDF

Guoguang He, Luonan Chen, and Kazuyuki Aihara: ``Associative Memory With a Controlled Chaotic Neural Network,'' Neurocomputing, Vol.71, pp.2794--2805 (2008--8).
DOI:10.1016/j.neucom.2007.09.005 PDF

Ruiqi Wang, Chunguang Li, Luonan Chen, and Kazuyuki Aihara: ``Modeling and Analyzing Biological Oscillations in Molecular Networks,'' Proceedings of the IEEE, Vol.96, pp.1361--1385 (2008--8).
DOI:10.1109/JPROC.2008.925448 PDF

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_ 2008/July

Wendi Wang, Shinji Nakaoka, Yasuhiro Takeuchi: ``Invest Conflicts of Adult Predators,'' Journal of Theoretical Biology, Vol.253, No.1, pp.12--23 (2008--7).
DOI:10.1016/j.jtbi.2007.09.021 PDF

Yoshihiko Horio and Kazuyuki Aihara: ``Analog Computation through High-dimensional Physical Chaotic Neuro-dynamics,'' Physica D, Vol.237, No.9, pp.1215--1225 (2008--7).
DOI:10.1016/j.physd.2008.01.030 PDF

Yoshito Hirata, Yuichi Katori, Hidetoshi Shimokawa, Hideyuki Suzuki, Timothy A. Brenkinsop, Eric J. Lang, and Kazuyuki Aihara: ``Testing a Neural Coding Hypothesis using Surrogate Data,'' Journal of Neuroscience Methods, Vol.172, pp.312--322 (2008).
DOI:10.1016/j.jneumeth.2008.05.004 PDF

Bing Wang, Kazuyuki Aihara, and Luonan Chen: "Jamming in Weighted Scale-free Gradient Networks," Europhysics Letters, Vol.83, pp.28006 (2008).
DOI:10.1209/0295-5075/83/28006 PDF

Xing-Ming Zhao, Yong Wang, Luonan Chen, and Kazuyuki Aihara: ``Protein domain annotation with integration of heterogeneous information sources,'' Proteins: Structure, Function, and Bioinformatics, Vol.72, No.1, pp.461--473 (2008--7).
DOI:10.1002/prot.21943 PDF

Shinji Nakaoka, and Yasuhiro Takeuchi: ``Two types of coexistence in cross-feeding microbial consortia,・ AIP Proceedings, Vol. 1028, pp. 233--260 (2008--7).
DOI:10.1063/1.2965092 &ref(): File not found: "Nakaoka-Biocomp08.pdf" at page "Archive";

Ikkyu Aihara and Kunichika Tsumoto: ``Nonlinear Dynamics and Bifurcations of a Coupled Oscillator Model for Calling Behavior of Japanese Tree Frogs (Hyla Japonica),'' Mathematical Biosciences, Vol.214, No.1/2, pp.6--10 (2008--7/8). DOI:10.1016/j.mbs.2008.03.004 &ref(): File not found: "Ikkyu-MBS2008.pdf" at page "Archive";

Takashi Shimada and Kazuyuki Aihara: ``A Nonlinear Model with Competition between Prostate Tumor Cells and its Application to Intermittent Androgen Suppression Therapy of Prostate Cancer,'' Mathematical Biosciences, Vol.214, No.1/2, pp.134--139 (2008--7/8).
DOI:10.1016/j.mbs.2008.03.001 PDF

Takahisa Ogino,Yoshihiko Horio and Kazuyuki Aihara: ``Analysis of Chaotic Neural Network through Mutual Information in Solving Quadratic Assignment Problems,'' Journal of Signal Processing, Vol.12, No.4, pp.291-294 (2008--7).
DOI:unconfirmed PDF

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_ 2008/June

Masahiro Kawasaki, Masataka Watanabe, Jiro Okuda, Masamichi Sakagami, and Kazuyuki Aihara: ``Human Posterior Parietal Cortex Maintains Color, Shape and Motion in Visual Short-term Memory,'' Brain Research, Vol.1213, pp.91--97 (2008--6--5).
DOI:10.1016/j.brainres.2008.03.037 PDF

Xing-Ming Zhao, Yong Wang, Luonan Chen, and Kazuyuki Aihara: ``Protein Domain Annotation with Predicted Domain-Domain Interaction Networks,'' Protein and Peptide Letters, Vol.15, No.5, pp.456--462 (2008--6).
DOI:10.2174/092986608784567609 PDF

Chunguang Li, Luonan Chen, and Kazuyuki Aihara: ``Impulsive Control of Stochastic Systems with Applications in Chaos Control, Chaos Synchronization, and Neural Networks,'' Chaos, Vol.18, No.2, 023132 (2008--6).
DOI:10.1063/1.2939483 PDF

Manish Dev Shrimali, Sudeshna Sinha, and Kazuyuki Aihara: ``Asynchronous Updating of Threshold-coupled Chaotic Neurons,'' Pramana-Journal of Physics, Vol.70, No.6, pp.1127--1134 (2008--6).
pdf-file@parama journal of physics PDF

Hiroyasu Ando, Sudeshna Sinha, and Kazuyuki Aihara: ``Emergent Organization of Oscillator Clusters in Coupled Self-regulatory Chaotic Maps,'' Pramana-Journal of Physics, Vol.70, No.6, pp.1153--1164 (2008--6).
pdf-file@parama journal of physics PDF

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_ 2008/May

Nobuaki Sugimine, Naoki Masuda, Norio Konno, and Kazuyuki Aihara: ``On Global and Local Critical Points of Extended Contact Process on Homogeneous Trees,'' Mathematical Bioscience, Vol.213, No.1, pp.13-17 (2008--5).
DOI:10.1016/j.mbs.2008.02.004 PDF

Xing-Ming Zhao, Rui-Sheng Wang, Luonan Chen, and Kazuyuki Aihara: ``Uncovering Signal Transduction Networks from High-throughput Data by Integer Linear Programming,'' Nucleic Acids Research, Vol.36, No.9, e48 (2008--5).
DOI:10.1093/nar/gkn145 PDF

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_ 2008/April

Munehisa Sekikawa, Naohiko Inaba, Takashi Tsubouchi, and Kazuyuki Aihara: ``Analysis of Torus Breakdown into Chaos in a Constraint Duffing van der Pol Oscillator,'' International Journal of Bifurcation and Chaos, Vol.18, No.4, pp.1051--1068 (2008--4).
DOI:10.1142/S0218127408020835 PDF

Hirokazu Tozaki, Tetsuya J. Kobayashi, Hiroyuki Okano, Ryo Yamamoto, Kazuyuki Aihara, and Hidenori Kimura: ``Reconstructing the Single-cell-level Behavior of a Toggle Switch from Population-level Measurements,'' FEBS Letter, Vol.582, No.7, pp.1067--1072 (2008--4).
DOI:10.1016/j.febslet.2008.02.057 PDF

Shingo Iwami, Shinji Nakaoka, and Yasuhiro Takeuchi: ``Mathematical Analysis of HIV Model with Frequency Dependence and Viral Diversity, Mathematical Biosciences and Engineerings, Vol. 5, pp. 457--476 (2008--4).
http://aimsciences.org/journals/pdfs.jsp?paperID=3408&mode=full PDF

Makito Oku and Kazuyuki Aihara: ``A Mathematical Model of Planning in the Prefrontal Cortex,'' Artificial Life and Robotics, Vol.12, No.1--2, pp.227--231 (2008--4).
DOI:10.1007/s10015-007-0472-6 PDF

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_ 2008/March

Takashi Kohno and Kazuyuki Aihara: ``Mathematical-model-based Design of Silicon Burst Neurons,'' Neurocomputing, Vol.71, No.7-9, pp.1619--1628 (2008--3).
DOI:10.1016/j.neucom.2007.04.003 PDF

Xing-Ming Zhao, Luonan Chen, Kazuyuki Aihara: ``Protein Classification with Imbalanced Data,'' Proteins: Structure, Function, and Bioinformatics, Vol.70, No.4, pp.1125--1132 (2008--3).
DOI:10.1002/prot.21870 PDF

Guoguang He, Manish Dev Shrimali and Kazuyuki Aihara: ``Threshold Activated Control of Chaotic Neural Network,'' Neural Networks, Vol.21, pp.114--121 (2008--3/4).
DOI:10.1016/j.neunet.2007.12.004 PDF

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_ 2008/February

Yoshito Hirata, Danilo P. Mandic, Hideyuki Suzuki, and Kazuyuki Aihara: ``Wind Direction Modelling using Multiple Observation Points,'' Philosophical Transactions of the Royal Society A, Vol.366, pp. 591--607 (2008--2).
DOI:10.1098/rsta.2007.2112 PDF

Kenji Morita, Rita Kalra, Kazuyuki Aihara, and Hugh P.C. Robinson: ``Recurrent Synaptic Input and the Timing of Gamma-frequency-modulated Firing of Pyramidal Cells During Neocortical "UP" States,'' Journal of Neuroscience, Vol.28, pp.1871--1881 (2008--2--20).
DOI:10.1523/JNEUROSCI.3948-07.2008 PDF

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_ 2008/January

Xing-Ming Zhao, Yong Wang, Luonan Chen, and Kazuyuki Aihara: ``Gene Function Prediction using Labeled and Unlabeled Data,'' BMC Bioinformatics, Vol.9, No.57 (2008--1--28).
DOI:10.1186/1471-2105-9-57 PDF

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_ 2007

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_ 2007/December

Yoshiyuki Sato, Taro Toyoizumi, and Kazuyuki Aihara: ``Bayesian Inference Explains Perception of Unity and Ventriloquism Aftereffect: Identification of Common Sources of Audiovisual Stimuli,'' Neural Computation, Vol.19, No.12, pp.3335--3355 (2007--12).
DOI:10.1162/neco.2007.19.12.3335 PDF

Guoguang He, Manish Dev Shrimali, and Kazuyuki Aihara: ``Partial State Feedback Control of Chaotic Neural Network and its Application,'' Physics Letters A, Vol.371, No.3, pp.228--233 (2007--11--12).
DOI:10.1016/j.physleta.2007.08.058 PDF

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_ 2007/November

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_ 2007/October

寳来俊介, 合原一究, 合原一幸：「ニホンアマガエル発声行動の相互作用に関する音声データの時系列解析」，'' 電気学会論文誌 C, Vol.127, No.10, pp.1692--1698 (2007--10).
DOI:10.1541/ieejeiss.127.1692 PDF

Ikkyu Aihara, Shunsuke Horai, Hiroyuki Kitahata, Kazuyuki Aihara, and Kenichi Yoshikawa: ``Dynamical calling behavior experimentally observed in Japanese tree frogs ({Hyla japonica}), '' IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences, Vol.E90-A, No.10, pp.2154--2161 (2007--10).
DOI:10.1093/ietfec/e90-a.10.2154 PDF

Yoshito Hirata, Shunsuke Horai, Hideyuki Suzuki, and Kazuyuki Aihara: ``Testing Serial Dependence by Random-shuffle Surrogates and the Wayland Method,'' Physics Letters A, Vol.370, No.3-4, pp.265--274 (2007--10--22).
DOI:10.1016/j.physleta.2007.05.061 PDF

Chunguang Li, Luonan Chen, Kazuyuki Aihara: ``Stochastic Stability of Genetic Networks with Disturbance Attenuation,'' IEEE Transactions on Circuits and Systems II, Vol.54, No.10, pp.892--896 (2007--10).
DOI:10.1109/TCSII.2007.901631 PDF

Manish Dev Shrimali, Sudeshna Sinha, and Kazuyuki Aihara: ``Asynchronous Updating Induces Order in Threshold Coupled Systems,'' Physical Review E, Vol.76, 046212 (2007--10).
DOI:10.1103/PhysRevE.76.046212 PDF

Takashi Kohno and Kazuyuki Aihara: ``Bottom-up Design of Class 2 Silicon Nerve Membrane,'' Journal of Intelligent & Fuzzy Systems, Vol.18, No.5, pp.465--475 (2007).
DOI:10.1016/j.neucom.2007.04.003

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_ 2007/September

Masashi Aono, Masahiko Hara, and Kazuyuki Aihara: ``Amoeba-based Neurocomputing with Chaotic Dynamics,'' Communications of the ACM, Vol. 50, No. 9, pp.69--72 (2007--9).
DOI:10.1007/s00354-008-0058-4 PDF

Kantaro Fujiwara, Hiroki Fujiwara, Minoru Tsukada, Kazuyuki Aihara: ``Reproducing Bursting Interspike Interval Statistics of the Gustatory Cortex,'' Biosystems, Vol.90, No.2, pp.442--448 (2007--9).
DOI:10.1016/j.biosystems.2006.10.007 PDF

Kosuke Hamaguchi, Masato Okada, and Kazuyuki Aihara: ``Variable Time Scales of Repeated Spike Patterns in Synfire Chain with Mexican-Hat Connectivity,'' Neural Computation, Vol.19, No.9, pp.2468-2491 (2007--9).
DOI:10.1162/neco.2007.19.9.2468 PDF

Zhijie Wang, Hong Fan, and Kazuyuki Aihara: ``An Associative Network with Chaotic Neurons and Dynamic Synapse,'' International Journal of Bifurcation and Chaos, Vol.17, No.9, pp.3085--3097 (2007--9).
DOI:10.1007/11494669_80 PDF

Ruiqi Wang, Luonan Chen and Kazuyuki Aihara: ``Detection of Cellular Rhythms and Global Stability within Interlocked Feedback Systems,'' Mathematical Biosciences, Vol.209, No.1, pp.171--189 (2007--9).
DOI:10.1016/j.mbs.2006.12.005 PDF

Wendi Wang, Shinji Nakaoka, and Yasuhiro Takeuchi: ``Invest Conflicts of Adult Predators,'' Journal of Theoretical Biology, Vol. 253, pp. 12--23 (2007--9)
DOI:10.1016/j.jtbi.2007.09.021 PDF

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_ 2007/August

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_ 2007/July

Naoki Masuda, Masato Okada, and Kazuyuki Aihara: ``Filtering of Spatial Bias and Noise Inputs by Spatially Structured Neural Networks,'' Neural Computation, Vol.19, No.7, pp.1854-1870 (2007--7).
DOI:10.1162/neco.2007.19.7.1854 PDF

Kenji Morita, Masato Okada, and Kazuyuki Aihara: ``Selectivity and Stability via Dendritic Nonlinearity,'' Neural Computation, Vol.19, No.7, pp.1798-1853 (2007--7).
DOI:10.1162/neco.2007.19.7.1798 PDF

Hideki Tanaka, Takashi Morie and Kazuyuki Aihara: ``A CMOS circuit for STDP with a symmetric time window,'' International Congress Series, Vol.1301, pp.152--155 (2007--7).
DOI:10.1016/j.ics.2006.12.029 PDF

Takashi Shimada, Yosuke Murase, Satoshi Yukawa, ``A Simple Model of Evolving Ecosystems,'' Journal of Artificial Life and Robotics, Vol.11, No.2, pp.153--156 (2007--7).
DOI:10.1007/s10015-007-0420-5 PDF

Nobuaki Sugimine and Kazuyuki Aihara: ``Stability of an Equilibrium State in a Multi-infectious-type SIS Model on a Truncated Network,'' Journal of Artificial Life and Robotics, Vol.11, No.2, pp.157--161 (2007--7).
DOI:10.1007/s10015-007-0421-4 PDF

Masatoshi Funabashi and Kazuyuki Aihara: ``Modeling Birdsong Learning with a Chaotic Elman Network,'' Journal of Artificial Life and Robotics,Vol.11, No.2, pp.162--166 (2007--7).
DOI:10.1007/s10015-007-0422-3 PDF

Kantaro Fujiwara and Kazuyuki Aihara: ``Classification of the Spike Sequences by Discriminating their Sources of Temporal Correlations,'' Journal of Artificial Life and Robotics, Vol.11, No.2, pp.167--170 (2007--7).
DOI:10.1007/s10015-007-0423-2 PDF

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_ 2007/June

Hiroyasu Ando, S. Boccaletti, and Kazuyuki Aihara: ``Automatic Control and Tracking of Periodic Orbits in Chaotic Systems,'' Physical Review E, Vol.75, 066211--1--5 (2007--6).
DOI:10.1103/PhysRevE.75.066211 PDF

Naoki Masuda and Kazuyuki Aihara: ``Dual Coding Hypotheses for Neural Information Representation,'' Mathematical Biosciences, Vol.207, pp.312-321 (2007--6).
DOI:10.1016/j.mbs.2006.09.009 PDF

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_ 2007/May

Shinji Nakaoka, and Yasuhiro Takeuchi: ``Mathematical study on sharing metabolism,'' RIMS Kokyuroku Bessatsu, No.3, pp.123--130 (2007--4).
DOI:unconfirmed &ref(): File not found: "Nakaoka-RIMS2007.pdf" at page "Archive";

Tsutomu Takeuchi, Takamichi Hinohara, Gen Kurosawa and Kenko Uchida: ``A temperature-compensated model for circadian rhythms that can be entrained by temperature cycles,'' Journal of Theoretical Biology, Vol246, No.1, pp.195-204 (2007--5).
DOI:10.1016/j.jtbi.2006.12.028 PDF

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_ 2007/April

Borja Ibarz, Gouhei Tanaka, Miguel A.F. Sanjuan, and Kazuyuki Aihara: ``Sensitivity versus Resonance in Two-dimensional Spiking-bursting Neuron Models,'' Physical Review E, Vol. 75, 041902 (2007--4).
DOI:10.1103/PhysRevE.75.041902 PDF

Munehisa Sekikawa, Naohiko Inaba and Kazuyuki Aihara: ``Coexisting Two Canards and their Breakdown into Chaos in the van der Pol Oscillator under Weak Periodic Perturbation,'' Physics Letters A, Vol.363, No.5-6, pp. 404-410 (2007--4--9).
DOI:10.1016/j.physleta.2006.11.039 PDF

Gouhei Tanaka and Kazuyuki Aihara: ``Collective Skipping: Aperiodic Phase Locking in Ensembles of Bursting Oscillators,'' Europhysics Letters, Vol.78, No.1, 10003 (2007--4).
DOI:10.1209/0295-5075/78/10003 PDF

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_ 2007/March

Shigeki Tsuji, Tetsushi Ueta, Hiroshi Kawakami, Hiroshi Fujii, and Kazuyuki Aihara: ``Bifurcations in Two-dimensional Hindmarsh-Rose Type Model,'' International Journal of Bifurcation and Chaos, Vol.17, No.3, pp.985--998 (2007--3).
DOI:10.1142/S0218127407017707 PDF

Shigeki Tsuji, Tetsushi Ueta, and Hiroshi Kawakami: ``Bifurcation Analysis of Current Coupled BVP Oscillators,'' International Journal of Bifurcation and Chaos, Vol.17, No.3, pp.837--850 (2007--3).
DOI:10.1142/S0218127407017586 PDF

Taro Toyoizumi, Jean-Pascal Pfister, Kazuyuki Aihara, and Wulfram Gerstner: ``Optimality Model of Unsupervised Spike-Timing-Dependent Plasticity: Synaptic Memory and Weight Distribution,''// Neural Computation, Vol.19, No.3, pp.639-671 (2007--3).
DOI:10.1162/neco.2007.19.3.639 PDF

Chunguang Li, Luonan Chen, and Kazuyuki Aihara: ``A Systems Biology Perspective on Signal Processing in Genetic Network Motifs,'' IEEE Signal Processing Magazine, Vol.24, No.2, pp.136--147 (2007--3).
DOI:10.1109/MSP.2007.323279 PDF

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_ 2007/February

Yukio Sakisaka, Kei-ichi Tainaka, Nobuaki Sugimine, Jin Yoshimura, Taro Hayashi, Kazuyuki Aihara, Tatsuya Togashi, Tatsuo Miyazaki: ``A Power Law for Extinction Process in Multiple Contact Process,'' Journal of the Physical Society of Japan, Vol.76, No.2, 023101--1--4 (2007--2).
DOI:10.1143/JPSJ.76.023101 PDF

Takashi Takemoto, Takashi Kohno, and Kazuyuki Aihara: ``Circuit Implementation and Dynamics of A Two-Dimensional MOSFET Neuron Model,'' International Journal of Bifurcation and Chaos, Vol.17, No.2, pp.459--508 (2007--2).
DOI:10.1007/s10015-005-0361-9 PDF

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_ 2007/January

Chunguang Li, Luonan Chen, and Kazuyuki Aihara: ``Stochastic synchronization of genetic oscillator networks,'' BMC Systems Biology, Vol.1, No.6, pp.1752--0509 (2007--1).
DOI:10.1186/1752-0509-1-6 PDF

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_ 2007/unconfirmed

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_ 2006

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_ 2006/December

Kazumichi Ohtsuka, Norio Konno, Naoki Masuda, and Kazuyuki Aihara: ``Phase Diagrams and Correlation Inequalities of a Three-state Stochastic Epidemic Model on the Square Lattice,'' International Journal of Bifurcation and Chaos, Vol.16, No.12, pp.3687--3693 (2006--12).
DOI:10.1142/S0218127406017075 PDF

Hiroyasu Ando and Kazuyuki Aihara: ``Adaptation to the Edge of Chaos in One-dimensional Chaotic Maps,'' Physical Review E, Vol.74, No.6, 066205 (2006--12).
DOI:10.1103/PhysRevE.74.066205 PDF

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_ 2006/November

Luonan Chen and Ruiqi Wang: ``Designing Gene Regulatory Networks with Specified Functions,'' IEEE Trans. on Circuits and Systems---I: Regular Papers, Vol.53, pp. 2444-2450 (2006).
DOI:10.1109/TCSI.2006.883880 PDF

Chunguang Li, Luonan Chen, and Kazuyuki Aihara: ``Stability of Genetic Networks with SUM Regulatory Logic: Lur’e System and LMI Approach,'' IEEE Trans. on Circuits and Systems---I: Regular Papers, Vol.53, No.11, pp.2451--2458 (2006--11).
DOI:10.1109/TCSI.2006.883882 PDF

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_ 2006/October

Ryosuke Hosaka, Tohru Ikeguchi, and Kazuyuki Aihara: ``Self-organizing Rhythmic Patterns with Spatio-temporal spikes in Class I and Class II Neural Networks,'' Lecture Notes in Computer Science, Vol.4232, pp.39--48 (2006).
DOI:10.1007/11893028_5 PDF

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_ 2006/September

Yuichi Katori, Naoki Masuda, and Kazuyuki Aihara: ``Dynamic Switching of Optimal Neural Codes in Networks with Gap Junctions,'' Neural Networks, Vol.19, pp.1463--1466 (2006).
DOI:10.1016/j.neunet.2006.04.003 PDF

Gen Kurosawa and Albert Goldbeter: ``Amplitude of Circadian Oscillations Entrained by 24-h Light Dark Cycles,'' Journal of Theoretical Biology, Vol.242, pp.478--488 (2006).
DOI:10.1016/j.jtbi.2006.03.016 PDF

Ruiqi Wang, Luonan Chen, and Kazuyuki Aihara: ``Construction of Genetic Oscillators with Interlocked Feedback Networks,'' Journal of Theoretical Biology, Vol.242, pp.454--463 (2006--9).
DOI:10.1016/j.jtbi.2006.03.015 PDF

Gen Kurosawa, Kazuyuki Aihara, and Yoh Iwasa: ``A Model for the Circadian Rhythm of Cyanobacteria that Maintains Oscillation without Gene Expression,'' Biophysical Journal, Vol.91, pp.2015--2023 (2006--9).
DOI:10.1529/biophysj.105.076554 PDF

Taro Toyoizumi, Kazuyuki Aihara, and Shun-ichi Amari: ``Fisher Information for Spike-based Population Decoding, Physical Review Letters, Vol.97, 098102 (2006--9).
DOI:10.1103/PhysRevLett.97.098102 PDF

Yoshihiro Morishita, Tetsuya J. Kobayashi, and Kazuyuki Aihara: ``An Optimal Number of Molecules for Signal Amplification and Discrimination in a Chemical Cascade,'' Biophysical Journal, Vol.91, pp.2072--2081 (2006--9).
DOI:10.1529/biophysj.105.070797 PDF

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_ 2006/August

Chunguang Li, Luonan Chen, and Kazuyuki Aihara: ``Transient Resetting: A Novel Mechanism for Synchrony and Its Biological Examples,'' PLoS Computational Biology, Vol.2, No.8, pp.0925--0931 (2006).
DOI:10.1371/journal.pcbi.0020103 PDF

Hiromichi Suetani, Yukito Iba, and Kazuyuki Aihara: ``Detecting Generalized Synchronization Between Chaotic Signals: A Kernel-based Approach,'' Journal of Physics A: Math. Gen. Vol.39, pp.10723--10742 (2006--8).
DOI:10.1088/0305-4470/39/34/009 PDF

Yoshito Hirata, Hideyuki Suzuki, and Kazuyuki Aihara: ``Reconstructing State Spaces from Multivariate Data using Variable Delays,'' Physical Review E 74, 026202 (2006).
DOI:10.1103/PhysRevE.74.026202 PDF

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_ 2006/July

Ruiqi Wang, Luonan Chen, and Kazuyuki Aihara: ``Synchronizing a Multicellular System by External Input: An Artificial Control Strategy,'' Bioinformatics, Vol.22, No.14, pp.1775--1781 (2006--7).
DOI:10.1093/bioinformatics/btl182 PDF

Takashi Takemoto, Takashi Kohno, and Kazuyuki Aihara: ``MOSFET Implementation of Class I* Neurons Coupled by Gap Junctions,'' Journal of Artificial Life and Robotics, Vol.10, No.1, pp.1--5 (2006--7).
DOI:10.1007/s10015-005-0361-9 PDF

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_ 2006/June

Naoki Masuda, Goce Jakimoski, Kazuyuki Aihara, and Ljupco Kocarev: ``Chaotic Block Ciphers: from Theory to Practical Algorithms,'' IEEE Transactions on Circuits and Systems---I: Regular Papers, Vol.53, No.6, pp.1341--1352 (2006--6).
DOI:10.1109/TCSI.2006.874182 PDF

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_ 2006/May

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_ 2006/April

Dorjsuren Battogtokh, Kazuyuki Aihara, and John J. Tyson: ``Synchronization of Eukaryotic Cells by Periodic Forcing,'' Physical Review Letters, Vol.96, 148102 (2006--4).
DOI:10.1103/PhysRevLett.96.148102 PDF

Hiromichi Suetani, Yukito Iba, and Kazuyuki Aihara: ``Detecting Generalized Synchronization of Chaotic Dynamical Systems: A Kernel-based Method and Choice of Its Parameter,'' Progress of Theoretical Physics Supplement, No.161, pp.340--343 (2006--4).
DOI:10.1143/PTPS.161.340 PDF

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_ 2006/March

Chunguang Li, Luonan Chen, and Kazuyuki Aihara: ``Synchronization of Coupled Nonidentical Genetic Oscillators,'' Physical Biology, Vol.3, pp.37--44 (2006--3).
DOI:10.1088/1478-3975/3/1/004 PDF

Kunichika Tsumoto, Tetsuya Yoshinaga, Hitoshi Iida, Hiroshi Kawakami, and Kazuyuki Aihara: ``Bifurcations in a Mathematical Model for Circadian Oscillations of Clock Genes,'' Journal of Theoretical Biology, Vol.239, No.1, pp.101--122 (2006--3).
DOI:10.1016/j.jtbi.2005.07.017 PDF

Kenji Morita, Kunichika Tsumoto, and Kazuyuki Aihara: ``Bidirectional Modulation of Neuronal Responses by Depolarizing GABAergic Inputs,'' Biophysical Journal, Vol.90, No.6, pp.1925--1938 (2006--3).
DOI:10.1529/biophysj.105.063164 PDF

Gouhei Tanaka, Borja Ibarz, Miguel A. F. Sanju{\'a}n, and Kazuyuki Aihara: ``Synchronization and Propagation of Bursts in Networks of Coupled Map Neurons, Chaos,'' Chaos, Vol.16, No.1, 013113 (2006--3).
DOI:10.1063/1.2148387 PDF

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_ 2006/February

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_ 2006/January

Naoki Masuda: ``Simultaneous Rate-synchrony Codes in Populations of Spiking Neurons,'' Neural Computation, Vol.18, pp.45--59 (2006).
DOI:10.1162/089976606774841521 PDF

Taro Toyoizumi and Kazuyuki Aihara, ``Generalization of the Mean-field Method for Power-law Distributions,'' International Journal of Bifurcation and Chaos, Vol.16, No.1, pp.129--135 (2006).
DOI:10.1162/neco.2007.19.10.2780 PDF

関川宗久，稲葉直彦，合原一幸: 「Taming Chaos 現象のからくりII」,'' 電子情報通信学会論文誌(A)，Vol.J89-A, No.1, pp.84--87 (2006).
DOI:unconfirmed PDF

Munehisa Sekikawa, Naohiko Inaba, Tetsuya Yoshinaga, and T. Tsubouchi: ``Bifurcation Structure of Successive Torus Doubling,'' Physics Letters A, Vol.348, pp.187--194 (2006).
DOI:10.1016/j.physleta.2005.08.089 PDF

Kunichika Tsumoto, Hiroyuki Kitajima, Tetsuya Yoshinaga, Kazuyuki Aihara, and Hiroshi Kawakami: ``Bifurcations in Morris-Lecar Neuron Model,'' Neurocomputing, Vol.69, No.4--6, pp.293--316 (2006--1).
DOI:10.1016/j.neucom.2005.03.006 PDF

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_ 2005/October

Naoki Masuda, Brent Doiron, Andre Longtin, and Kazuyuki Aihara: ``Coding of Temporally Varying Signals in Networks of Spiking Neurons with Global Delayed Feedback,'' Neural Computation, Vol.17, pp.2139--2175 (2005--10).
DOI:10.1162/0899766054615680 PDF

Yoshito Hirata, Kevin Judd, and Kazuyuki Aihara: ``Characterizing Chaotic Response of a Squid Axon through Generating Partitions,'' Physics Letters A, Vol.346, pp.141--147 (2005--10).
DOI:10.1016/j.physleta.2005.07.081 PDF

Tianshou Zhou, Luonan Chen, and Kazuyuki Aihara: ``Molecular Communication through Stochastic Synchronization Induced by Extracellular Fluctuations,'' Physical Review Letters, Vol.95, 178103 (2005--10).
PDF

Tadayoshi Fushiki, Fumiyasu Komaki, and Kazuyuki Aihara: ``Nonparametric Bootstrap Prediction,'' Bernoulli, Vol.11, No.2, pp.293--307 (2005)--10.
DOI:10.1016/j.ijforecast.2004.09.005 PDF

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_ 2005/September

Kosuke Hamaguchi, Masato Okada, Michiko Yamana, and Kazuyuki Aihara: ``Correlated Firing in a Feedforward Network with Mexican-Hat-Type Connectivity,'' Neural Computation, Vol.17, No.9, pp.2034--2059 (2005--9).
DOI:10.1162/0899766054322937 PDF

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_ 2005/August

Kunichika Tsumoto, Tetsuya Yoshinaga, and Hiroshi Kawakami: ``Bifurcation of Synchronization Phenomena Observed in a Coupled Neuron Model for Circadian Clock Rhythms,'' Systems and Computers in Japan, Vol.36, No.8, pp.1516--1528 (2005--8).
DOI:10.1002/scj.v36:8 &ref(): File not found: "Tsumoto_etal_SCJ_2005.pdf" at page "Archive";

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_ 2005/July

Yoshihiro Morishita, Tetsuya Kobayashi, and Kazuyuki Aihara: ``Evaluation of the Performance of Mechanisms for Noise Attenuation in a Single-gene Expression,'' Journal of Theoretical Biology, Vol.235, pp.241--264 (2005--7).
DOI:10.1016/j.jtbi.2005.01.007 PDF

Hideyuki Suzuki, Shunji Ito, and Kazuyuki Aihara: ``Double Rotations,'' Discrete and Continuous Dynamical Systems, Vol.13, pp.515--532 (2005--7).
http://aimsciences.org/journals/pdfs.jsp?paperID=1019&mode=full PDF

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_ 2005/June

Kenji Morita and Kazuyuki Aihara: ``A Network Model with Pyramidal Cells and GABAergic Non-FS Cells in the Cerebral Cortex,'' Neurocomputing, Vol.65--66, pp.697--707 (2005--6).
DOI:10.1016/j.neucom.2004.10.100 PDF

Kenji Morita, Kunichika Tsumoto, and Kazuyuki Aihara: ``Possible Effects of Depolarizing GABA Conductance on the Neuronal Input-output Relationship: A Modeling Study,'' Journal of Neurophysiology, Vol.93, pp.3504--3523 (2005--6).
DOI:10.1152/jn.00988.2004 PDF

Kosuke Hamaguchi, Masato Okada, Shigeru Kubota, and Kazuyuki Aihara: ``Stochastic Resonance of Localized Activity Driven by Common Noise,'' Biological Cybernetics, Vol.92, No.6, pp.438--444 (2005--6).
DOI:10.1007/s00422-005-0570-2 PDF

Luonan Chen, Ruiqi Wang, Tianshou Zhou, and Kazuyuki Aihara: ``Noise-induced Cooperative Behavior in a Multicell System,'' Bioinformatics, Vol.21, No.11, pp.2722--2729 (2005--6).
DOI:10.1093/bioinformatics/bti392 PDF

Yoshihiko Horio, Tohru Ikeguchi, and Kazuyuki Aihara: ``A Mixed Analog/Digital Chaotic Neuro-computer System for Quadratic Assignment Problems,'' INNS Neural Networks, Vol.18, No.5-6, pp.505--513 (2005--6/7).
DOI:10.1016/j.neunet.2005.06.022 PDF

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_ 2005/May

Takashi Kohno and Kazuyuki Aihara: ``A MOSFET-based model of a Class 2 Nerve membrane,'' IEEE Transactions on Neural Networks, Vol.16, No.3, pp.754--773 (2005--5).
DOI:10.1109/TNN.2005.844855 PDF

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_ 2005/April

Gouhei Tanaka and Kazuyuki Aihara: ``Multistate Associative Memory with Parametrically Coupled Map Networks,'' International Journal of Bifurcation and Chaos, Vol.15, No.4, pp.1395--1410 (2005--4).
DOI:10.1109/APCCAS.2004.1413055 PDF

Taro Toyoizumi, Jean-Pascal Pfister, Kazuyuki Aihara, and Wulfram Gerstner: ``Generalized Bienenstock-Cooper-Munro Rule for Spiking Neurons that Maximizes Information Transmission,'' Proc. Natl. Acad. Sci. USA, Vol.102, No.14, pp.5239--5244 (2005--4).
DOI:10.1073/pnas.0500495102 PDF

Shigeru Kubota and Kazuyuki Aihara: ``Analyzing Global Dynamics of a Neural Field Model,'' Neural Processing Letters, Vol.21, pp.133--141 (2005--4).
DOI:10.1007/s11063-004-3425-2 PDF

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_ 2005/March

Yoshihiko Horio, Takuya Taniguchi, and Kazuyuki Aihara: ``An Asynchronous Spiking Chaotic Neuron Integrated Circuit,'' Neurocomputing, Vol.64, pp.447--472 (2005--3).
DOI:10.1016/j.neucom.2004.09.001 PDF

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_ 2005/February

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_ 2005/January

Gouhei Tanaka, Miguel A.F. Sanjuan, and Kazuyuki Aihara: ``Crisis-induced intermittency in two coupled chaotic maps: Towards understanding chaotic itinerancy,'' Physical Review E, Vol.71, pp.016219-1--11 (2005--1).
DOI:10.1103/PhysRevE.71.016219 PDF

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_ 2005/unconfirmed

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_ 2004

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_ 2004/December

Tsuyoshi Okamoto, Masataka Watanabe, Kazuyuki Aihara, and Shunsuke Kondo: ``An Explanation of Contextual Modulation by Short-range Isotropic Connections and Orientation Map Geometry in the Primary Visual Cortex,'' Biological Cybernetics, Vol.91, pp.396--407 (2004--12).
DOI:10.1007/s00422-004-0528-9 PDF

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_ 2004/November

Hiroaki Tanaka and Kazuyuki Aihara: ``Analysis of the Hodgkin-Huxley Equations with Noise: the Effects of Noise on Chaotic Neurodynamics,'' Artificial Life and Robotics, Vol.8, pp.190--196 (2004).
DOI:10.1007/s10015-004-0311-y &ref(): File not found: "HTnk-AROB2004.pdf" at page "Archive";

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_ 2004/October

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_ 2004/September

Naoki Masuda and Norio Konno: ``Subcritical Behavior in the Alternating Supercritical Domany-Kinzel Dynamics,'' The European Physical Journal B, Vol.40, No.3, pp.313--319 (2004).
DOI:10.1140/epjb/e2004-00279-5 PDF

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_ 2004/August

Ryota Tomioka, Hidenori Kimura, Tetsuya J. Kobayashi, and Kazuyuki Aihara: ``Multivariate Analysis of Noise in Genetic Regulatory Networks,'' Journal of Theoretical Biology, Vol.229, pp.501--521 (2004).
DOI:10.1016/j.jtbi.2004.04.034 PDF

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_ 2004/July

Luonan Chen, Ruiqi Wang, Tetsuya J.\ Kobayashi, and Kazuyuki Aihara: ``Dynamics of Gene Regulatory Networks with Cell Division Cycle,'' Physical Review E, Vol.70, pp.011909-1--12 (2004).
DOI:10.1103/PhysRevE.70.011909 PDF

津元国親，吉永哲哉，川上博：「時計遺伝子リズムのニューロンモデルにみられる同調現象の分岐」,'' 電子情報通信学会論文誌, 情報・システムII, Vol.J87-DII, No.7, pp.1516--1528 (2004).
DOI:unconfirmed PDF

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_ 2004/June

Yoshihiro Morishita and Kazuyuki Aihara: ``Noise-Reduction through Interaction in Gene Expression and Biochemical Reaction Processes,'' Journal of Theoretical Biology, Vol.228, pp.315--325 (2004).
DOI:10.1016/j.jtbi.2004.01.007 PDF

Kazuyuki Aihara, Ichiro Tsuda, and Hiroshi Fujii: ``Prologue - The Pioneering Work of the Late Professor Gen Matsumoto,'' Journal of Integrative Neuroscience, Vol.3, No.2, pp.111--113 (2004).
DOI:10.1142/S0219635204000464 PDF

Hiroshi Fujii, Kazuyuki Aihara, and Ichiro Tsuda: ``Functional Relevance of `Excitatory' GABA Actions in Cortical Interneurons: A Dynamical Systems Approach,'' Journal of Integrative Neuroscience, Vol.3, No.2, pp.183--205 (2004).
DOI:10.1142/S0219635204000506 PDF

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_ 2004/May

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_ 2004/April

Naoki Masuda and Kazuyuki Aihara: ``Global and Local Synchrony of Coupled Neurons in Small-world Networks,'' Biological Cybernetics, Vol.90, pp.302--309 (2004).
DOI:10.1007/s00422-004-0471-9 PDF

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_ 2004/March

Naoki Masuda, Norio Konno, and Kazuyuki Aihara: ``Transmission of severe acute respiratory syndrome in dynamical small-world networks,'' Physical Review E, 69, 031917 (2004).
DOI:10.1103/PhysRevE.69.031917 PDF

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_ 2004/February

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_ 2004/January

Shigeru Kubota and Kazuyuki Aihara: ``Computational Model of Obsessive--Compulsive Disorder: A Unified Explanation of the Treatment,'' International Journal of Bifurcation and Chaos, Vol.14, No.1, pp.263--277 (2004--1).
DOI:10.1142/S0218127404009156 PDF

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_ 2004/unconfirmed

Tianshou Zhou, Luonan Chen, Ruiqi Wang, and Kazuyuki Aihara: ``Intercellular Communications Induced by Random Fluctuations,'' Genome Informatics, Vol.15, No.2, pp.223--233 (2004).
http://www.jsbi.org/modules/journal1/index.php/GIW04/GIW04F023.pdf PDF