Laboratories for Mathematics, Lifesciences, and Informatics
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- K. Morino, Y. Hirata, R. Tomioka, H. Kashima, K. Yamanishi, N. Hayashi, S. Egawa, and K. Aihara: "Predicting disease progression from short biomarker series using expert advice algorithm," Scientific Reports, Vol. 5, Article No. 8953 (2015).
- T. Sasai, K. Morino, G. Tanaka, J.A. Almendral, and K. Aihara: "Robustness of Oscillatory Behavior in Correlated Networks," PLOS ONE, Vol.10, No.4, e0123722, pp.1-21 (2015).
- H. Ma, K. Aihara, and L. Chen: "Detecting Causality from Nonlinear Dynamics with Short-term Time Series," Scientific Reports, Vol.4, Article No.7464, pp.1-10 (2014).
- B. Wang, G. Tanaka, H. Suzuki, and K. Aihara: "Epidemic Spread on Interconnected Metapopulation Networks," Physical Review E, Vol.90, 032806-1-12 (2014).
- R. Liu, X. Wang, K. Aihara, and L. Chen: "Early Diagnosis of Complex Diseases by Molecular Biomarkers, Network Biomarkers, and Dynamical Network Biomarkers," Medicinal Research Reviews, Vol.34, No.3, pp.455-478 (2014).
- R. Liu, X. Yu , X. Liu, D. Xu, K. Aihara, and L. Chen:"Identifying Critical Transitions of Complex Diseases based on a Single Sample," Bioinformatics, Vol.30, No.11, pp.1579-1586 (2014).
- K. Sato, J.S. Takeuchi, N. Misawa1, T. Izumi, T. Kobayashi,
Y. Kimura, S. Iwami, A. Takaori-Kondo, W.-S. Hu, K. Aihara,
M. Ito, D.S. An, V.K. Pathak, Y. Koyanagi: "APOBEC3D and APOBEC3F Potently Promote HIV-1 Diversification and Evolution in Humanized Mouse Model," PLOS Pathogens, Vol.10, No.10, e1004453 (2014).
- G. Tanaka, C. Urabe, and K. Aihara:
"Random and Targeted Interventions for Epidemic Control in Metapopulation Models," Scientific Reports, Vol.4, Article No.5522, pp.1-8 (2014).
- M. Hasegawa, H. Hirai, K. Nagano, H. Harada, and K. Aihara:"Optimization for Centralized and Decentralized Cognitive Radio Networks," Proceedings of the IEEE, Vol.102, No.4, pp.574-584 (2014); K. Aihara and M. Hasegawa: "Optimization, Chaotic Neural Networks, and Coherent Ising Machines [Further Thoughts]," Proceedings of the IEEE, Vol.102, No.4, p.585 (2014).
- I. Aihara, T. Mizumoto, T. Otsuka, H. Awano, K. Nagira, H.G. Okuno, and K. Aihara: "Spatio-Temporal Dynamics in Collective Frog Choruses Examined by Mathematical Modeling and Field Observations," Scientific Reports, Vol.4, Article No.3891, pp.1-8 (2014).
- K. Sato, N. Misawa, S. Iwami, Y. Satou, M. Matsuoka, Y. Ishizaka, M. Ito, K. Aihara, D.S. An, Y. Koyanagi: "HIV-1 Vpr Accelerates Viral Replication during Acute Infection by Exploitation of Proliferating CD4+ T Cells In Vivo," PLOS PATHOGENS, Vol.9, No.12, e1003812-1-12 (2013).
- K. Sakamoto, Y. Katori, N. Saito, S. Yoshida, K. Aihara, H. Mushiake: "Increased Firing Irregularity as an Emergent Property of Neural-State Transition in Monkey Prefrontal Cortex," PLOS ONE, Vol.8, No.12, e80906-1-26 (2013).
- B. Wang, H. Suzuki, and K. Aihara: "Evaluating Roles of Nodes in Optimal Allocation of Vaccines with Economic Considerations," PLOS ONE, Vol.8, No.8, e70793-1-9 (2013).
- T. Omi, Y. Ogata, Y. Hirata, and K. Aihara: "Forecasting Large Aftershocks within One Day after the Main Shock," Scientific Reports, Vol.3, Article No.2218, pp.1-7 (2013).
- K. Sasahara, Y. Hirata, M. Toyoda, M. Kitsuregawa, and K. Aihara: "Quantifying Collective Attention from Tweet Stream," PLOS ONE, Vol.8, No.4, e61823, pp.1-10 (2013).
- K. Ejima, K. Aihara, and H. Nishiura: "The Impact of Model Building on the Transmission Dynamics under Vaccination: Observable (Symptom-Based) versus Unobservable (Contagiousness-Dependent) Approaches," PLOS ONE, Vol.8, No.4, e62062, pp.1-10 (2013).
- H. Suzuki, J. Imura, Y. Horio, and K. Aihara: "Chaotic Boltzmann machines," Scientific Reports, Vol.3, Article No.1610, pp.1-5 (2013).
- H. Suzuki, J. Imura, and K. Aihara: "Chaotic Ising-like dynamics in traffic signals," Scientific Reports, Vol.3 Article No.1127, pp.1-6 (2013).
- T. Kanamaru, H. Fujii, and K. Aihara:
"Deformation of Attractor Landscape via Cholinergic Presynaptic Modulations: A Computational Study Using a Phase Neuron Model," PLOS ONE, Vol.8, No.1, e53854, pp.1-14 (2013).
- R. Liu, M. Li, Z.-P. Liu, J. Wu, L. Chen, and K. Aihara: "Identifying Critical Transitions and their Leading Biomolecular Networks in Complex Diseases," Scientific Reports, Vol.2, Article No.813, pp.1-9 (2012).
- B. Wang, L. Cao, H. Suzuki, and K. Aihara: "Safety-information-driven Human Mobility Patterns with Metapopulation Epidemic Dynamics," Scientific Reports, Vol.2, Article No.887, pp.1-8 (2012).
- T. Kohda, Y. Horio, Y. Takahashi, & K. Aihara: "Beta Encoders: Symbolic Dynamics and Electronic Implementation," International Journal of Bifurcation and Chaos, Vol.22, No.9, 1230031 (2012).
- K. Iwayama, Y. Hirata, K. Takahashi, K. Watanabe, K. Aihara
& H. Suzuki: "Characterizing global evolutions of complex systems via intermediate network representations," Scientific Reports, Vol.2, No.423, pp.1-5 (2012).
- L. Chen, R. Liu, Z.-P. Liu, M. Li, and K. Aihara: "Detecting Early-warning Signals for Sudden Deterioration of Complex Diseases by Dynamical Network Biomarkers," Scientific Reports, Vol.2, No.342, pp.1-6 (2012).
- G. Tanaka, K. Morino, and K. Aihara: "Dynamical Robustness in Complex Networks: The Crucial Role of Low-degree Nodes," Scientific Reports, Vol.2, No.232, pp.1-6 (2012).
- T. Okamoto, K. Ikezoe, H. Tamura, M. Watanabe, K. Aihara, and I. Fujita: "Predicted Contextual Modulation Varies with Distance from Pinwheel Centers in the Orientation Preference Map," Scientific Reports, Vol.1, No.114, pp.1-11 (2011).
- K. Aihara(Ed.): "Theory of Hybrid Dynamical Systems and its Applications to Biological and Medical Systems," Philosophical Transactions of the Royal Society A, Vol.368, No.1930 (2010) (details).
- L. Chen, R. Wang, C. Li, and K. Aihara,
Modeling Biomolecular Networks in Cells: Structures and Dynamics, Springer (2010)
- BUNKI, a free software for bifurcation analysis, is developed by ERATO Aihara Complexity Modelling Project, JST
- K Aihara: Chaos in neurons, Scholarpedia, 3(5):1786 (2008)
